PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC877_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HSF

Protein Properties

Length: 331aa MW: 38486.2 Da PI: 9.4016

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC877_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	38.2	3.7e-12	10	93	2	89
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F +ly+i+ed++ +++isw +n+nsf+v+d +++ +++L k +n+ F+ +L gFk v + ++ eF+h+ F+++ RrC877_p3 10 FYLQLYQIVEDRSSDQIISWGkTNNNSFIVWDLKRLRSDILLKfsSVLGRNLPEFLAKLRSHGFKPVFKGPGE-------LEFEHDDFTRD 93 8899***************8999************982234579*************999998.......9*****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	7.0E-14	5	93	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.7E-9	6	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.58E-11	7	94	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.4E-9	10	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MIRKLSTSSF YLQLYQIVED RSSDQIISWG KTNNNSFIVW DLKRLRSDIL LKFSSVLGRN 60 LPEFLAKLRS HGFKPVFKGP GELEFEHDDF TRDPLMKKMM AKALSERIEK FDSQIKAMKC 120 RLKAKKDSLK VNAEELKYPI ADHYSVDQIN QLVQSLELSY STLQERRRFL AAKANLEGRQ 180 HLGTQSLNPS QFTKYPQESM FINQEFCAFD QTDNFQHLCF SNTPDYSLAQ DYSCSEVVEM 240 IVENCPAIAK ELRKLRFQKS HGSYSDVKKD QCFQTQCHSP KTHFTLTCYV ERLFKQHLSP 300 TLYITKTSLT FTFTKTITTF IFMVASQAKA K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	1e-23	Winged helix-turn-helix transcription repressor DNA-binding