 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC8730_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB |
| Protein Properties |
Length: 345aa MW: 38826.4 Da PI: 8.1542 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC8730_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 57.7 | 2.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl
RrC8730_p2 14 KGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
678*******************************************97 PP
|
| 2 | Myb_DNA-binding | 47 | 5.7e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++++E+ l++++++ lG++ W+ Ia +++ gRt++++k++w++
RrC8730_p2 67 RGAFSQDEECLIIELHAALGNR-WSQIATRLP-GRTDNEIKNFWNS 110
89********************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MGRHSCCYKP KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60
LRPDLKRGAF SQDEECLIIE LHAALGNRWS QIATRLPGRT DNEIKNFWNS CLKKKLRRKG 120
IDPTTHKPLI SDLQTLNVIN QKLTSSQAVK STGLINNPHE QSMVVSSQPG PWWFPSMANQ 180
NAAFCFSSST TPSVSDQIVS LISSMSTSSS TTSMTSNFNP FPELYYCNNT VPSQTNSIYS 240
AFFGNSFTEA SQINNNNNPV VDDHPHGQDM KSWASEILHY TEHNQSSETG LEAEVKPDIG 300
KYYWRSTSSS SSPNENAATL LQDADVEWYG KNLQKLNNMA FDQSL
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY099777 | 0.0 | AY099777.1 Arabidopsis thaliana transcription factor ATMYB4 (At5g26655) mRNA, complete cds. |
| GenBank | AY519629 | 0.0 | AY519629.1 Arabidopsis thaliana MYB transcription factor (At5g26660) mRNA, complete cds. |
| GenBank | BT008740 | 0.0 | BT008740.1 Arabidopsis thaliana At5g26655 gene, complete cds. |
