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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC872_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
NAC |
| Protein Properties |
Length: 397aa MW: 45130.8 Da PI: 7.8382 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC872_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.4 | 2.4e-52 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99
l pGfrFhPtdeelv++yL++kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t++g+Wkatg+d++++s+ +++
RrC872_p2 15 LLPGFRFHPTDEELVSFYLRRKVEHRPLSI-KLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRVTSAGFWKATGTDRPIYSSeGSKC 113
579***************************.89***************7777889***************************************956677 PP
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
+gl+k+Lvfykgra kg+ktdW+mhe+rl
RrC872_p2 114 IGLRKSLVFYKGRAAKGVKTDWMMHEFRL 142
***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 397 aa
Download sequence Send
to blast |
MGENNGEAKK MEDVLLPGFR FHPTDEELVS FYLRRKVEHR PLSIKLITQL DIYKYDPWDL 60
PKFAMTGEKE WYFYCPRDRK YRNSSRPNRV TSAGFWKATG TDRPIYSSEG SKCIGLRKSL 120
VFYKGRAAKG VKTDWMMHEF RLPSSSTHTL SDTPLSPNVS KIFFDKDSWA ICRIFRKTNT 180
TALKATSHSF ASSLPKEGST DTEPYEKPSN TPHIYPENIL ENSVSFNFYK KNMNVTKPPR 240
SYYDEKEATK TCTCTTTTPF SYMDFASPAS PGPCLDEQYL RSLLLASQET QPPQLPKVMD 300
NNDISSFLLN MSSSESSFLG GYTNQIGSSI DLTTAILAQE QCPALVNLSQ GYQDHQAFSH 360
TLEFGHLTSA STSVGDQHQN QKHHMLMESY YSVNLLN
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-54 | 15 | 181 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-54 | 15 | 181 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-54 | 15 | 181 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-54 | 15 | 181 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 9e-54 | 15 | 181 | 17 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 9e-54 | 15 | 181 | 17 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189353 | 1e-174 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
