PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8589_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 301aa    MW: 34446 Da    PI: 6.269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8589_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.6e-15112163155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  RrC8589_p1 112 QRMTHIAVERNRRKQMNEYLAVLRSLMPTS---YAQRGDQASIVGGAINYVKELE 163
                 79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.78E-13110167No hitNo description
Gene3DG3DSA:4.10.280.102.7E-14110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.367111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-17111172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-12112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-11117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPLKSVVYPQ DPLGYLSTCK DFTFQDLYYQ EEVVVAQDTK NNINKLGQEQ SLENDKEQDR  60
QWRDYHQYPL LPYLEEELGL PAIEMESPPP LQQRRKRRRT RSNKNVEEIE NQRMTHIAVE  120
RNRRKQMNEY LAVLRSLMPT SYAQRGDQAS IVGGAINYVK ELEHILQSME PKRITTTTHE  180
ANTSCSSLVD PFSDFFSFPQ YSTKSSLITE GSSSPAEIEV TVAEGHANIK IMVKKKPKQL  240
LKLVASIQSL RLTLLHLNVT TLDNSILYSI SVKVEEGSQL STVDDIAAAV NQIIRRIQEE  300
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298QRRKRRR
29498RKRRR
39499RKRRRT
4112123RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447843.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK911e-159BH094_ARATH; Transcription factor bHLH94
TrEMBLM4DIQ00.0M4DIQ0_BRARP; Uncharacterized protein
STRINGBra016377.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-142bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]