PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8572_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 276aa    MW: 30780 Da    PI: 4.0374
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8572_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.53.5e-131552239
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                +ienk  r +tf+kRr g+  KA  L+v +da++a++ 
  RrC8572_p1 15 KIENKASRATTFTKRRDGLYSKAAQLCVITDAQIAILA 52
                69*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-13665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.026657IPR002100Transcription factor, MADS-box
CDDcd002661.24E-16753No hitNo description
SuperFamilySSF554555.89E-14761IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-8828IPR002100Transcription factor, MADS-box
PfamPF003194.6E-131555IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-82843IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-84364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVKKGGTKRK PVMTKIENKA SRATTFTKRR DGLYSKAAQL CVITDAQIAI LATPSSSNSN  60
VPSSRLVTPP LSPWSPLISP DRDLLLFQRV RPKRCEKPRA YGSDGVYEST IQPSQGLEDQ  120
TLTTTTIDDE DMVEISPESD EWSEMDLHKL LQDCDCEEED QSVSDKTCNN SNSESSAAER  180
SWEEAAMDLD LDTIITYDDL PELPPLVSNS DKEEEEDQNV SVKTCNNNNS VSSLPAAAEK  240
SLEEATMALD FDSIFEGLMS YDDNEHLFWS DDLLFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442004.11e-143PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A078II694e-57A0A078II69_BRANA; BnaC06g02000D protein
STRINGBo6g013290.19e-56(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.12e-16M-type_MADS family protein