PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC847_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 392aa    MW: 45133.4 Da    PI: 4.849
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC847_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.14.5e-24180237155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk...gLtlehvkSHLQkYRl 55 
                kpr+ Wt+eLH+ F +ave++GG e+A+Pk il++m+ +   gLt+++v+SHLQkYRl
  RrC847_p6 180 KPRMTWTSELHQLFEKAVEKMGGLEQAVPKLILKCMQEEmdvGLTRNNVASHLQKYRL 237
                79**********************************9876679**************8 PP
2Response_reg38.65.6e-1444117174
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpi 74 
                   +++vd +p+ + l+++++++  y +v+ +++g+ea++ l   ++++Dl++ D   p+++Gle+lk+ir+e  +lp+
     RrC847_p6  44 IVLVDSDPKSLCLMKNLMTQFSY-QVRDFKNGDEAIAFLmvSKHEIDLVIWDFHVPEINGLEALKTIRKEM-DLPV 117
                   689********************.*************99445555**********************8866.5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-1440111IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.5E-1540117No hitNo description
PROSITE profilePS5011016.67743156IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-1144117IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.41E-1046119No hitNo description
PROSITE profilePS512949.674177240IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-23177238IPR009057Homeodomain-like
SuperFamilySSF466892.87E-13178238IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-20180238IPR006447Myb domain, plants
PfamPF002493.6E-9182236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSVSSNILKE NSRDLLREEE PGDDEFEFPI NDEDEELPTT SIRIVLVDSD PKSLCLMKNL  60
MTQFSYQVRD FKNGDEAIAF LMVSKHEIDL VIWDFHVPEI NGLEALKTIR KEMDLPVPVS  120
KEIISVLWQH VYRKRISVYS SESDPGENVG LDQDLYQSNK EDSNSGEQNS SYQKENKSKK  180
PRMTWTSELH QLFEKAVEKM GGLEQAVPKL ILKCMQEEMD VGLTRNNVAS HLQKYRLNSG  240
KKSSVLQETQ EDSQWRNAGP NTALTASKPI QNSNFNLHTR VPYFANDQDA RNGPMQYPST  300
NYITTNNHFM TNSLAYLPYT DSFHQQQQQQ FQHQQYPHSS LQLPSMITKQ ESPYVSAAME  360
NPDLIPNKDL PNIDWTDYLP GGVSYFDKTN RY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553351e-162AC155335.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490129.10.0PREDICTED: putative two-component response regulator ARR20 isoform X1
SwissprotQ9LZJ81e-107ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLA0A078FEL10.0A0A078FEL1_BRANA; BnaA09g40030D protein
STRINGBra041027.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.13e-81response regulator 20