PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8469_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 409aa MW: 44917.9 Da PI: 6.0018

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8469_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	30.6	6.9e-10	179	199	2	22
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +D ++WrKYGqK++kgs++pr RrC8469_p1 179 SDLWAWRKYGQKPIKGSPYPR 199 699*****************9 PP
2	WRKY	53	6.8e-17	221	259	22	59
EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 r+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ RrC8469_p1 221 RGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 259 99***998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-29	172	261	IPR003657	WRKY domain
PROSITE profile	PS50811	26.865	173	261	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-7	176	200	IPR003657	WRKY domain
SMART	SM00774	3.5E-33	178	260	IPR003657	WRKY domain
Pfam	PF03106	1.8E-5	180	200	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-14	219	261	IPR003657	WRKY domain
Pfam	PF03106	7.0E-14	221	259	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MDNFQGDLTD VVRGIGSGHM TSSPGPPEGP SPSSLSPPLT SDFHVDFPSF ANSEMNPFGD 60 PFVSMTDPLL NLPANFSGAG DSKSNNSFAV FPNVTVDDHI KSQCSVFPRI RISQRNIIQD 120 ASKCNSPAMA TSSVAAASPW GMISVDSTNR CRKGQGKKVV CIPAPAAMNS RSSGEVVPSD 180 LWAWRKYGQK PIKGSPYPRY ITFLIEYLMT TSMLNHLFLI RGYYRCSSSK GCPARKQVER 240 SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRSSSSSSSN PCSKSATATT SSSSRVSQNK 300 EEPNKSHLPF ISTPHVAKTV KEEDVEKCQE NIEFDDVDDT YRPEFQHHLG DFFADLDDLE 360 EDSLTMLCTQ GFSGDNSGGG NLDNKRMIPD VFSDFFDDDS SRSCYTKFQ

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MDNFQGDLTD VVRGIGSGHM TSSPGPPEGP SPSSLSPPLT SDFHVDFPSF ANSEMNPFGD  60
PFVSMTDPLL NLPANFSGAG DSKSNNSFAV FPNVTVDDHI KSQCSVFPRI RISQRNIIQD  120
ASKCNSPAMA TSSVAAASPW GMISVDSTNR CRKGQGKKVV CIPAPAAMNS RSSGEVVPSD  180
LWAWRKYGQK PIKGSPYPRY ITFLIEYLMT TSMLNHLFLI RGYYRCSSSK GCPARKQVER  240
SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRSSSSSSSN PCSKSATATT SSSSRVSQNK  300
EEPNKSHLPF ISTPHVAKTV KEEDVEKCQE NIEFDDVDDT YRPEFQHHLG DFFADLDDLE  360
EDSLTMLCTQ GFSGDNSGGG NLDNKRMIPD VFSDFFDDDS SRSCYTKFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-20	157	262	6	80	Disease resistance protein RRS1
5w3x_D	4e-20	157	262	6	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593147	0.0	KM593147.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY53) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481188.1	0.0	PREDICTED: probable WRKY transcription factor 35
Swissprot	O64747	1e-156	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0A7RI83	0.0	A0A0A7RI83_BRAOC; WRKY53 protein
TrEMBL	A0A0D3C476	0.0	A0A0D3C476_BRAOL; Uncharacterized protein
STRING	Bo4g182940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-137	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]