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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC8469_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 409aa MW: 44917.9 Da PI: 6.0018 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC8469_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 30.6 | 6.9e-10 | 179 | 199 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS
WRKY 2 dDgynWrKYGqKevkgsefpr 22
+D ++WrKYGqK++kgs++pr
RrC8469_p1 179 SDLWAWRKYGQKPIKGSPYPR 199
699*****************9 PP
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2 | WRKY | 53 | 6.8e-17 | 221 | 259 | 22 | 59 |
EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
r+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
RrC8469_p1 221 RGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 259
99*****998****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MDNFQGDLTD VVRGIGSGHM TSSPGPPEGP SPSSLSPPLT SDFHVDFPSF ANSEMNPFGD 60 PFVSMTDPLL NLPANFSGAG DSKSNNSFAV FPNVTVDDHI KSQCSVFPRI RISQRNIIQD 120 ASKCNSPAMA TSSVAAASPW GMISVDSTNR CRKGQGKKVV CIPAPAAMNS RSSGEVVPSD 180 LWAWRKYGQK PIKGSPYPRY ITFLIEYLMT TSMLNHLFLI RGYYRCSSSK GCPARKQVER 240 SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRSSSSSSSN PCSKSATATT SSSSRVSQNK 300 EEPNKSHLPF ISTPHVAKTV KEEDVEKCQE NIEFDDVDDT YRPEFQHHLG DFFADLDDLE 360 EDSLTMLCTQ GFSGDNSGGG NLDNKRMIPD VFSDFFDDDS SRSCYTKFQ
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM593147 | 0.0 | KM593147.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY53) mRNA, complete cds. |