PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 237aa MW: 25535.6 Da PI: 8.2917

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8416_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	95	149	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L +rqV vWFqNrRa+ k RrC8416_p2 95 RKKLRLSKEQALVLEETFKQHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTK 149 778899***********************************************98 PP
2	HD-ZIP_I/II	123.8	8.3e-40	95	184	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+++++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l RrC8416_p2 95 RKKLRLSKEQALVLEETFKQHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDSLTEENRRLHKEVSELR-AL 184 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.1E-14	4	54	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	3.2E-19	75	149	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-19	79	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	91	151	IPR001356	Homeobox domain
SMART	SM00389	3.4E-15	93	155	IPR001356	Homeobox domain
Pfam	PF00046	6.7E-16	95	149	IPR001356	Homeobox domain
CDD	cd00086	4.79E-16	95	152	No hit	No description
PROSITE pattern	PS00027	0	126	149	IPR017970	Homeobox, conserved site
SMART	SM00340	8.7E-27	151	194	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.9E-12	151	185	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009641	Biological Process	shade avoidance
GO:0009725	Biological Process	response to hormone
GO:0010218	Biological Process	response to far red light
GO:0005634	Cellular Component	nucleus
GO:0009506	Cellular Component	plasmodesma
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MLSVERNSDV GSFLRGSNVN RTPSAAVVIN LEEDVAGMSS PNSTVSTVSG NKRDLAATRG 60 DGGVDENDAE KASCSHGGGS GGSDEEEGGN CDGTRKKLRL SKEQALVLEE TFKQHSTLNP 120 KQKLALAKQL NLRTRQVEVW FQNRRARTKL KQTEVDCEYL KRCCDSLTEE NRRLHKEVSE 180 LRALKLSPHL YMHMTPPTTL TMCPSCERVS ASSSSSAMAA ATPPPSTASG GGGRIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	99	TRKKLRL
2	143	151	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By transition from light to far-red light. {ECO:0000269\|PubMed:8106086}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018465539.1	1e-145	PREDICTED: homeobox-leucine zipper protein ATHB-4-like
Swissprot	P92953	1e-109	ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBL	A0A3P6CBY5	1e-130	A0A3P6CBY5_BRACM; Uncharacterized protein
STRING	Bra040335.1-P	1e-129	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2577	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44910.1	2e-95	homeobox-leucine zipper protein 4

Publications ? help Back to Top
Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development. Plant Signal Behav, 2014. [PMID:23838958] Francisco M, et al. Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense. Front Plant Sci, 2016. 7: p. 1010 [PMID:27462337] Gallemí M, et al. A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity. New Phytol., 2017. 216(3): p. 798-813 [PMID:28805249]