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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC8403_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 642aa MW: 72426.5 Da PI: 6.1032 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC8403_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 171.6 | 2.5e-53 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97
lp GfrF+Ptdeel+++yL+ k++g++le+ +vi+e+d++k+ePwdLp + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++s k+
RrC8403_p1 14 LPLGFRFRPTDEELINHYLRLKINGRDLEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIKS-KK 110
699***************************.99***************6448899999**************************************.99 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128
+g+kktLvfy+grap+ge+t+W+mheyr+
RrC8403_p1 111 MIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 141
99***************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 642 aa
Download sequence Send
to blast |
MTTETQATLS METLPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP 60 GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV 120 FYRGRAPRGE RTNWIMHEYR ATDKDLDGTG PGQNPYVLCR LFHKPSDVAA NCDEVENVNA 180 TPTTTRCSRE DNNNSSEMFQ ETAASRVHAQ NISDDTERCP SDKGSDVKPD DDAPVIKTEK 240 SVGHAETSRA RDRVSGKSIV EESPFARDFS SLYGPSFAQT GDQTYTPAPH ASIGFPASHM 300 DSMYSSDFGN CHYGLHFQDG AAIQDESLAD VLDEVFHNQS ASQGKDFALP KMMHWSFPKD 360 TFGFVNGGAT AEASSFPQFV PDVGASRLVS DHHYVDSKEA VEIQSSSGSS RTFTPLHSNV 420 LGQYPPVSYA TMDPFNSNVN QREQSSFEQQ LPVDRNISPN ELNARPRENQ TDLDLLVNQG 480 TAPRRIRLQM EQPLTPVNNE EERDVDNHEE DEVQSAMTKI VEESEKCLLD KDKSRAPGHP 540 SLSESRTQGT AHRRIRLQTR IRKLPRAPNN TGRDSDHSEE VETHSKEKED VSASSSSSWQ 600 KQKRLMRKRL VQCSSMVIIM TVMVLLVGIW KESRDAKLLS DT
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 9e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_B | 9e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_C | 9e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_D | 9e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_A | 9e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_B | 9e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_C | 9e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_D | 9e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF738269 | 0.0 | KF738269.1 Brassica napus NAC transcription factor 14 (NAC14.1) mRNA, complete cds. |