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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC8349_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 92aa MW: 9211.09 Da PI: 4.1942 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 80.9 | 1.5e-25 | 47 | 92 | 2 | 48 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgC 48 +k+rY+eClkNhA+++GghavDGC+Efmps ge+g+ +alkCaACgC RrC8349_p2 47 SKIRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGSLDALKCAACGC 92 579**************************9.999************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-19 | 49 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.1E-23 | 49 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.0E-22 | 50 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.044 | 51 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MNFEEQEEEM EMSGVNPTGG YDSLSGEGAT SSGGGGGGGG IKSVGGSKIR YRECLKNHAV 60 NIGGHAVDGC CEFMPSGEDG SLDALKCAAC GC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469960.1 | 7e-60 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 8e-39 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | E4MXL4 | 5e-37 | E4MXL4_EUTHA; mRNA, clone: RTFL01-39-I06 | ||||
TrEMBL | V4LVY8 | 5e-37 | V4LVY8_EUTSA; Uncharacterized protein | ||||
STRING | Cagra.2197s0042.1.p | 7e-38 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-30 | homeobox protein 22 |
Publications ? help Back to Top | |||
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