PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8349_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ZF-HD

Protein Properties

Length: 92aa MW: 9211.09 Da PI: 4.1942

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8349_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	80.9	1.5e-25	47	92	2	48
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgC 48 +k+rY+eClkNhA+++GghavDGC+Efmps ge+g+ +alkCaACgC RrC8349_p2 47 SKIRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGSLDALKCAACGC 92 579************************9.999*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-19	49	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.1E-23	49	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.0E-22	50	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.044	51	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MNFEEQEEEM EMSGVNPTGG YDSLSGEGAT SSGGGGGGGG IKSVGGSKIR YRECLKNHAV 60 NIGGHAVDGC CEFMPSGEDG SLDALKCAAC GC

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469960.1	7e-60	PREDICTED: zinc-finger homeodomain protein 2
Swissprot	Q9SB61	8e-39	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	E4MXL4	5e-37	E4MXL4_EUTHA; mRNA, clone: RTFL01-39-I06
TrEMBL	V4LVY8	5e-37	V4LVY8_EUTSA; Uncharacterized protein
STRING	Cagra.2197s0042.1.p	7e-38	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-30	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]