PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8334_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 514aa    MW: 57376.7 Da    PI: 6.563
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8334_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.62.5e-27283336256
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 ++++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  RrC8334_p1 283 KKVDWTQELHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 336
                 689*****************.********************************96 PP
2Response_reg29.24.8e-113712817109
                   HHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  17 alekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    le+ +y +v++++d +eal  + ++   +++ ++ ++ ++ +  e +k +++++++lp i+++     +++ +++ +Ga +fl Kp +pe+l +
    RrC8334_p1  37 KLESMDY-IVTTFSDETEALSAVIKSPesFHIAIVEVNTSDEN--ESFKFLEAAKDHLPTIMISNDHCITTTMKCIALGAVEFLQKPLSPEKLKN 128
                   58999**.***************66665699999999988755..77888888889********9999************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-1317141No hitNo description
PROSITE profilePS5011020.42620134IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.57E-1233135IPR011006CheY-like superfamily
PfamPF000725.6E-735128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.88E-738133No hitNo description
PROSITE profilePS5129417.615279338IPR017930Myb domain
SuperFamilySSF466891.88E-18280339IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-26281338IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-25283336IPR006447Myb domain, plants
PfamPF002491.5E-7285333IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MVFTSNDISK WENFPKGLRV LLLDCGDGIS GAETRSKLES MDYIVTTFSD ETEALSAVIK  60
SPESFHIAIV EVNTSDENES FKFLEAAKDH LPTIMISNDH CITTTMKCIA LGAVEFLQKP  120
LSPEKLKNIW QHVVHKAFND GGTDVSESLK PVKESVVSML HLDTDMMSTD EKDPAPSTPQ  180
LKQDSRLLDG CDRQENINSS TEKENMEDQD TGESKSVDTT NHDDNVIVKE EKLDGEKKEG  240
QTGDTRSEKT DSVKFQKKED ETTKHNIKST GIKNLSGNKP SRKKVDWTQE LHKKFVQAVE  300
QLGVDQAIPS RILELMKVDG LTRHNVASHL QKFRMHRRNL LPKEDHNRRW IQSRENQRQI  360
HRQYNGFQQQ HRPVMAYPVW GLPGVHPPGA VPPLWPPPLQ SSGQLPPWHW RPPYPTVNGN  420
AWGCPVVQPV TGTFSSPPVT GAFSTPSAIQ LDEEMVDQVV KEAISKPWLP LPLGLKPPSA  480
ESVLAELSRQ GISAVPSSSS SSSSCPINGS RRLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16284335758ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471641.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A398AK010.0A0A398AK01_BRACM; Uncharacterized protein
STRINGBra013277.1-P0.0(Brassica rapa)
STRINGBra013278.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]