 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC8270_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
TALE |
| Protein Properties |
Length: 283aa MW: 32277.6 Da PI: 6.5842 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC8270_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 29.5 | 1.2e-09 | 209 | 243 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
k +yps++++ LA+++gL+++q+ +WF N+R ++
RrC8270_p1 209 KWPYPSEQQKLALAESTGLDQKQINNWFINQRKRH 243
569*****************************885 PP
|
| 2 | ELK | 41.5 | 2.7e-14 | 163 | 184 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK qLlrKYsgyLgsLkqEF+
RrC8270_p1 163 ELKGQLLRKYSGYLGSLKQEFM 184
9********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009934 | Biological Process | regulation of meristem structural organization |
| GO:0048440 | Biological Process | carpel development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MEINHQNELL TGGLNPCSSA SVKAKIMAHP HYHRLLLAYV NCQKVGAPPE VQTRLEETCS 60
SAAAAAASMG PTGSLGEDPG LDQFMEAYCE MLVKYEQELS KPFKEAMVFL QHVECQFKSL 120
SLSSPSSFSG YGEAAIERNN NGSSEEEVDM NNEFVDPQAE DRELKGQLLR KYSGYLGSLK 180
QEFMKKRKKG KLPKEARQQL LDWWSRHYKW PYPSEQQKLA LAESTGLDQK QINNWFINQR 240
KRHWKPSEDM QFVVMDATHP HHYFMDNVMG NPFPIDHISS TML
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 178 | 187 | LKQEFMKKRK |
| 2 | 184 | 188 | KKRKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Required for shoot apical meristem formation during embryogenesis. Probably binds to the DNA sequence 5'-TGAC-3' (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU480585 | 0.0 | GU480585.1 Brassica rapa SHOOT MERISTEMLESS (STM) mRNA, complete cds. |
