 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC8119_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C2H2 |
| Protein Properties |
Length: 401aa MW: 46219.9 Da PI: 9.2641 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC8119_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.2 | 0.00013 | 153 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
y+C+ Cg+ ++++ +Lk+H + H
RrC8119_p1 153 YVCGVCGRKCRTNLDLKKHFKQlH 176
9******************98766 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MSLLCISIET LYPKPSLLHK PHFFPLPDTN PSFAGFPRRR LRQQPPIIKS CLKPASSSEI 60
DMVRNKEGIF APKEKKVVVL WDLDNKPPRG PPYEAATALR RVAEKLGRVV EISAYANRHA 120
FIHLPHWVVE ERRSRRSLDF AERKGEVVPA EPYVCGVCGR KCRTNLDLKK HFKQLHERER 180
QKKVNRMRTL KGKKRQKFKE RYVSGNEKYN EAARRLLTPK VGYGLEAELR RAGVYVKTVE 240
DKPQAADWAV KRQIQHSMTR GIDWLVLVSD DKDFSDMLRK AREADLGTVV VSDRDGVLGR 300
QADLWVPWMG VENGEIGEKD LVPEKRRRFD DDEEVEVERE REGDGLFSLS YDEDEREEMR 360
VESDGFGRFS LLDLGFCFGI VLGIKLSDPF FHSSTGEQSE I
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 36 | 42 | PRRRLRQ |
| 2 | 323 | 328 | EKRRRF |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232439 | 0.0 | AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence. |
