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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC8114_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 258aa MW: 29365.8 Da PI: 6.1186 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC8114_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 70.5 | 2.4e-22 | 101 | 161 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
+Dg++WrKYGqK++k s + r YYrC++a +C++ k+v++ ++ p+++ +tY g+H +e
RrC8114_p1 101 NDGFSWRKYGQKTIKTSSHQRCYYRCAYAkdrNCNALKRVQQIEDSPSLFRTTYVGKHICE 161
8***************************99999*************************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MSHGVDKAVE ALLRGQESAY RLKTVLEHAS SVPTEPLFDS VLHSFSFALS LFASSNTQPP 60 HRESSQRKPT PVVARKSPKK NSHGEEGLEQ YSHDSPNPHH NDGFSWRKYG QKTIKTSSHQ 120 RCYYRCAYAK DRNCNALKRV QQIEDSPSLF RTTYVGKHIC EVNAFFQLND DICNGSKMIR 180 FDKIDQAMPD SVIPQPVPVE QDAILIEGTD QNMNLECGSN EFLVDDEQLW AYQFPPCSPG 240 NFMFLDDLSE FDYNPFHV
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF430072 | 0.0 | KF430072.1 Brassica rapa WRKY transcription factor 66 (WRKY66) mRNA, complete cds. |