PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 318aa MW: 34708.4 Da PI: 8.6496

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC80_p12	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7.1e-17	50	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++eE+e++++a++++G W+ I +++g ++t+ q++s+ qk+ RrC80_p12 50 REKWSEEEHERFIEAIQLYGRA-WRQIQEHIG-TKTAIQIRSHAQKF 94 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-15	44	99	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.419	45	99	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-16	48	97	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.2E-10	49	90	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-13	49	97	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-14	50	93	IPR001005	SANT/Myb domain
CDD	cd00167	1.56E-10	52	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAAPDRSEDV SSNVENGSCN SNEGTNHETS SDRIANAAKV RKPYTVSKQR EKWSEEEHER 60 FIEAIQLYGR AWRQIQEHIG TKTAIQIRSH AQKFFSKVAR EADSGSDGSI MIPPPRPKRK 120 PTHPYPRKSP VPYSRSPSSA MEKETKSPTS VLSAFATEDE VNRCSSPNSC TTDIQSIDKK 180 NDYAVSNQSF KEDGAVTGST PISSIMLFGK IVLVAGGSNK TSSSREGGAN HKSMTGQDSS 240 HVDTVLSLGV WETSCTGSNA YGSVTKVSGN LEKTAEPCYP VNGFRPYKRC LSEREVTSSL 300 SLVASEEEGS RRRARVCS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269\|PubMed:14523250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00146	DAP	Transfer from AT1G18330	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269\|PubMed:14523250, ECO:0000269\|PubMed:19805390}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018467719.1	0.0	PREDICTED: protein REVEILLE 7
Swissprot	B3H5A8	1e-149	RVE7_ARATH; Protein REVEILLE 7
TrEMBL	A0A3N6QIK3	0.0	A0A3N6QIK3_BRACR; Uncharacterized protein
STRING	Bra025914.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9174	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	1e-140	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]