PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC8042_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 85aa MW: 10471.1 Da PI: 8.2162

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8042_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	27.5	8.6e-09	9	84	5	64
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................kvka..eekewyfFskr 64 f+FhP eelv +yL +k ++ ++++ +ik +d+++ + w+Lp+ + a +e+e+y+F+++ RrC8042_p1 9 FQFHPAVEELVRDYLMRKKSSPDFRC--FIKMMDVFDNDLWTLPHvreiqpywsqkaveplerS--AfyKEHECYYFVRK 84 99**************99999888..79***********955788888887766666542..14467789999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	11.89	5	85	IPR003441	NAC domain
Pfam	PF02365	2.3E-4	8	83	IPR003441	NAC domain
SuperFamily	SSF101941	6.41E-7	9	82	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MLGMLSNRFQ FHPAVEELVR DYLMRKKSSP DFRCFIKMMD VFDNDLWTLP HVREIQPYWS 60 QKAVEPLERS AFYKEHECYY FVRKT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00150	DAP	Transfer from AT1G19040	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM26252	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19040.1	9e-16	NAC family protein