PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8034_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 564aa    MW: 62321.3 Da    PI: 5.0541
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8034_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.5e-07317356538
    zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                  C+ +e+ +++  C  ++  lC++C +e+H        H+
  RrC8034_p2 317 QCDVCENAPATVICCADEAALCPKCDVEIHAAnklaskHQ 356
                 7*****************************6566666665 PP
2zf-B_box28.72.7e-09368399435
    zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 
                 ++C+ ++ek + +fC +++ llC+dC +++H 
  RrC8034_p2 368 PRCDICQEKAAFIFCVEDRALLCRDCDESIHV 399
                 79*****************************4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF070594.7E-6337253IPR009769Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
SMARTSM003361.9E-9313360IPR000315B-box-type zinc finger
PROSITE profilePS501199.143313360IPR000315B-box-type zinc finger
CDDcd000213.28E-7316358No hitNo description
PROSITE profilePS501199.684365412IPR000315B-box-type zinc finger
SMARTSM003361.4E-16365412IPR000315B-box-type zinc finger
CDDcd000211.54E-10368411No hitNo description
PfamPF006434.3E-7368408IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MSASSGEETD PEWIKKVKLE GAVPCLSPDS KDSKNSWTTP SPNTFMVIGP HYFSDKVKVP  60
AGDFLLKPLG FDWVKGPTKL SEILTYPNSR IRKALDEQFQ TEDSAATTKP FVWAFNLQLP  120
HKDNYSAVAY FVSTEPIPQG SLMDQFLKGD DAFKKSRLKL IANIVKGPWI VRKAVGEQAI  180
CVIGRALSCK YVSGESFVEI DVDIGSSMVA SAIVHLAFGY ITTLTVDLAF LIESQTDAEL  240
PEKLLGAVRF SELQTDSAGV MELSSSSSSE RSSWWKSIGN GLTNLLNQDT ANMNSTSSPG  300
NNQKDENVIK RQTMKIQCDV CENAPATVIC CADEAALCPK CDVEIHAANK LASKHQRLHL  360
NSLSTKFPRC DICQEKAAFI FCVEDRALLC RDCDESIHVA NSRSANHQRF LATGIKVALS  420
SSSCSKETEK NHQSEPSNNQ QKAKEIPAAK TPSQQQQPSP VAAPLPWAVD DFFHFSDPEF  480
TDKQKGQLDL GELEWFSDMG FFGDEISQET LPAAEVPELS VAHLGHVHSY RPMKSNVSYK  540
KPRLEMIRDD EDDDEEHFIV PDLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434199.10.0PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like
RefseqXP_018434207.10.0PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like
TrEMBLA0A078FDM40.0A0A078FDM4_BRANA; BnaC05g04110D protein
STRINGBo5g007160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1162122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.11e-133DBB family protein