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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC7993_p2 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
M-type_MADS |
| Protein Properties |
Length: 163aa MW: 18259.1 Da PI: 9.7732 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC7993_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 64.3 | 1.3e-20 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
krie+ks +qvtf+kRrng++ KA LSvLC+ va++++sstgkly
RrC7993_p2 9 KRIESKSSQQVTFCKRRNGLIEKARQLSVLCESSVAILMVSSTGKLY 55
79********************************************9 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 163 aa
Download sequence Send
to blast |
MGRRKVEIKR IESKSSQQVT FCKRRNGLIE KARQLSVLCE SSVAILMVSS TGKLYSSSFG 60
DSMAKIIKRY EIQHAAALKN MDLAEKSRNY LSHKELLEIV NKLDEANLDD ASVESLIYLE 120
GQFKAALSME KKRLPETEDE GAMSSVNSYG NSPPKTKTLP LLK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the negative regulation of flowering time in short days, probably through the photoperiodic and vernalization pathways. Prevents premature flowering, particularly in the cv. Landsberg erecta background. In non-inductive photoperiods (e.g. short days), required for flowering through VIL2-mediated maintenance of the epigenetically repressed state of MAF5 via H3K9me2 and plant homeodomain / polycomb repressive complex 2 (PHD-PRC2)-dependent H3K27me3. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:18798874, ECO:0000269|PubMed:18852898, ECO:0000269|PubMed:20837520, ECO:0000269|PubMed:21150261, ECO:0000269|PubMed:21175890, ECO:0000269|PubMed:21398257, ECO:0000269|PubMed:22378382}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by vernalization. Repressed by VIL2, AGL6, CLF, EMF2 and FIE via epigenetic chromatin H3K27me3 and H3K9me2 regulation during the vegetative development. {ECO:0000269|PubMed:12724541}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC166741 | 9e-82 | AC166741.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080C09, complete sequence. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Conte MG,Gaillard S,Droc G,Perin C
Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants.
BMC Genomics, 2008. 9: p. 183
[PMID:18426584] - Xu Y,Gan ES,Ito T
The AT-hook/PPC domain protein TEK negatively regulates floral repressors including MAF4 and MAF5.
Plant Signal Behav, 2014.
[PMID:23733063] - Liu B, et al.
Interplay of the histone methyltransferases SDG8 and SDG26 in the regulation of transcription and plant flowering and development.
Biochim. Biophys. Acta, 2016. 1859(4): p. 581-90
[PMID:26854085] - Gong X,Shen L,Peng YZ,Gan Y,Yu H
DNA Topoisomerase Iα Affects the Floral Transition.
Plant Physiol., 2017. 173(1): p. 642-654
[PMID:27837087] - Cui Z, et al.
SKIP controls flowering time via the alternative splicing of SEF pre-mRNA in Arabidopsis.
BMC Biol., 2017. 15(1): p. 80
[PMID:28893254]
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