PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC796_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 359aa    MW: 38510.9 Da    PI: 7.534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC796_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10292337655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  RrC796_p6 292 SIAERERRTRISGRLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 337
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.814286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14289353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-11290341No hitNo description
Gene3DG3DSA:4.10.280.103.4E-13291351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-8292337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSSLPGG GGGGAGLIRY GSAPGSLLNS MVDEVIGGSN ARDFNFPPPD  60
NFLGDFFAGA DSSSLRSESM TCGVNSSGGQ KHLGNDNNNN NNKDLLDRSY GGFNEISQHK  120
SINNVGGGGS SSGSYSLARQ RSSPADFFSY LSGEKNSFSL NQPTSDYNQQ GGSNAGRGPS  180
RLKSQLSFTS HDPLSRISEV NETSVHDGSG HSFSAAGFGA ATDSWDDGSG SIGFTVTRPT  240
KRPKDMSSGL FSQYSLPSDT SMNYMDNYMQ LPEDSVPCKV RAKRGFATHP RSIAERERRT  300
RISGRLKKLQ DLVPNMDKQT SYSDMLDLAV QHIKGLQNQL QTLKKEQENC TCECSERPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3175490.0KF317549.1 Brassica oleracea var. capitata PA1 (PA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466054.10.0PREDICTED: transcription factor bHLH128-like
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A078IPH20.0A0A078IPH2_BRANA; BnaA10g03540D protein
TrEMBLA0A3P6D3730.0A0A3P6D373_BRACM; Uncharacterized protein
STRINGBra015456.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-157bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]