PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7906_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 593aa    MW: 67232.8 Da    PI: 7.1196
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7906_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.44.8e-083984351954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yps  ++  LA++ gL+ +qV++WF N R +
  RrC7906_p1 398 FEHflHPYPSDVDKHILARQSGLSRSQVSNWFINARVR 435
                 554459******************************88 PP
2BELL1024.2e-33256327172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 e++elqk+kakLl +lee+++rY +y+eq++  + +Fe+++g+g+a++Yt+lA++a+SrhFrcLkd +++qi
  RrC7906_p1 256 EFMELQKRKAKLLAMLEELKRRYGHYREQMRLAAQAFEVAVGVGAAEMYTALASRAMSRHFRCLKDGLVGQI 327
                 679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-60177325IPR006563POX domain
PfamPF075261.1E-40183323IPR006563POX domain
PROSITE profilePS5007111.726376439IPR001356Homeobox domain
CDDcd000866.84E-10379440No hitNo description
SMARTSM003895.5E-8379443IPR001356Homeobox domain
SuperFamilySSF466891.71E-16380447IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-26382446IPR009057Homeodomain-like
PfamPF059208.8E-17396435IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MASDQFHGHN HHQQHQHQMI NQIHGFDERN NNPTDHQQHH YNQQIFGSNS NMGMMIDFSR  60
HHQTGITSGM DHHHYHHQTS GGTVQNQLFE DSSSSMRLCS VNNNFSSEVN DERAPQRPSQ  120
GLSLSLSSSN PTSISLQSFD LRPQQQGYSG KSTHHQNLPH SQMMMLMNSH HQNNNSNHHQ  180
FQIGSSKYLI AAQELLSEFC SLGVKESDDE VMMKHKRKQK GKQQEDWDTS NNNKDQHEQS  240
ATTSSKKHVP PLHSLEFMEL QKRKAKLLAM LEELKRRYGH YREQMRLAAQ AFEVAVGVGA  300
AEMYTALASR AMSRHFRCLK DGLVGQIQAT SQALGERDED NRGVSIAARG ETPRLRLLDQ  360
ALRQQKSYRQ MSLVEAHPWR PQRGLPERAV TALRAWLFEH FLHPYPSDVD KHILARQSGL  420
SRSQVSNWFI NARVRLWKPM IEEMYCEETR GAEEQQMEIT NPMFMDTKPD PNQIMRVEPE  480
SLSSVVTKTG HKDNSNLGTA SFGSTFDFSS YSNQAVTYTG EGGVRDVSLT LGLQNGAVSL  540
ALSPVTAQGG PLYYGRDHME GSVQYTASML DDDQAQNLPY MNLMGAQSLH DMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-15385443563Homeobox protein Meis2
3k2a_B7e-15385443563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528660.0AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477443.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A3P6CRB10.0A0A3P6CRB1_BRACM; Uncharacterized protein
STRINGBra025497.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]