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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7886_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 159aa MW: 17154 Da PI: 9.5429 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H RrC7886_p1 82 HTCPICGVEFPMGQALGGHMRRH 104 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.2E-9 | 37 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.5 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.683 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.8E-5 | 81 | 108 | No hit | No description |
PROSITE profile | PS50157 | 9.827 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.04 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-11 | 82 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MVAISEIKST VEDTAVANCL MLLSRVGQEP VGDQKRVFTC KTCLKEFHSF QALGGHSASH 60 KKHNNNENLS GLIKKAKAPS SHTCPICGVE FPMGQALGGH MRRHRNESGA ALVTRALLPE 120 PTMTTLKKSS SGKRVACLDL SLGMVENLNL KLELGRTVC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018472831.1 | 1e-114 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 2e-90 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A398A1A9 | 1e-95 | A0A398A1A9_BRACM; Uncharacterized protein | ||||
STRING | Bra006691.1-P | 2e-95 | (Brassica rapa) | ||||
STRING | Bra006692.1-P | 2e-95 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 7e-93 | C2H2 family protein |