PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7777_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 324aa    MW: 36390.6 Da    PI: 5.1395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7777_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.1e-14125176155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a++   A++Y+k+L+
  RrC7777_p1 125 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASVIGGAINYLKELE 176
                 79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-17123188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-12123180No hitNo description
Gene3DG3DSA:4.10.280.101.7E-13124180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.19124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-10130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALEAIVYPQ DPFSYISYKD FQFHDLYFQQ EEDRDPLETK NNIKLGQEQR QGFASISYNG  60
KSGDNNDDYN YNDQEDLQWP RDDLPYGSIV DTENQPPPLV LATGEGRTKR RRTKSSKNKE  120
EIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYAQRGD QASVIGGAIN YLKELEHHLQ  180
SMEPPVNTPA IGEAGGGPGD HKTTVSGSSS GPFLDFFAFP QYSRRPSSSL VAEGTAEIEV  240
TMVESHASVK ILAKKRSKQL LKLMASIQSL RLTVIHLNVT TRDDSVLYSI SLKVEEGSQL  300
NTVEDIAAAV NQILRSIEED SAFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125136RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442650.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T41e-180BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A078IKL00.0A0A078IKL0_BRANA; BnaC06g24170D protein
STRINGBo6g092570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-169bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]