PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7750_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 363aa    MW: 41948.6 Da    PI: 8.9421
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7750_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.69.8e-0780120343
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                 ++k +rr+++NReAAr+sR+RKk    +++++  +  ++ +
  RrC7750_p2  80 PDKTQRRLAQNREAARKSRLRKKVWKLHYKDRERAYVQQLE 120
                 689*******************9887777777544444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.6E-677139No hitNo description
SMARTSM003386.9E-478142IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-582136No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
PfamPF141449.4E-30193268IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNTYTTTSSH FVPPTRFEIY DPLDQISTMW EESFKNNNGG FYTPNSIIIP SNEKPDSLSE  60
DGTGGTPHKF DQEASTSRHP DKTQRRLAQN REAARKSRLR KKVWKLHYKD RERAYVQQLE  120
TSRLKLIHLE QELDRARQQG FYASNRVDTN PLSFPDDMGS VQDFHLFVFV MLLVGIVAFE  180
MEYGHWVEKQ NRQISELRSV LHGQVSDVEL RLLVDNAMKH YFQLFRMKSA AAKLDVFYIM  240
SGMWKTSAER FFLWIGGFRP SELLKAIMST SGRCSMEKLQ HTLAESVAAG ELGEGSYVPQ  300
ITCAMERLEA LVSFVNQADH LRHETLQQMH RILTTRQAAR GLLALGEFFQ RLRALSSSWE  360
TRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553441e-115AC155344.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080A08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442773.10.0PREDICTED: transcription factor TGA4
RefseqXP_018442774.10.0PREDICTED: transcription factor TGA4
SwissprotQ391620.0TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A3P6D6I90.0A0A3P6D6I9_BRACM; Uncharacterized protein
TrEMBLQ4ABR50.0Q4ABR5_BRARP; 80A08_2
STRINGBra009063.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.20.0TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]