PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC774_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 129aa    MW: 14963.2 Da    PI: 10.141
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC774_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.7e-074083344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +++ +a + + ++   +W  +a+ +g  ++++++k ++
        RrC774_p5 40 SWTSKQNKIFERALAVYDKDtpdRWQNVAKAVG-SKSAEEVKRHY 83
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6733691IPR017884SANT domain
SMARTSM007176.9E-63789IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-44093IPR009057Homeodomain-like
SuperFamilySSF466893.86E-124094IPR009057Homeodomain-like
CDDcd001674.45E-44783No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
NLSNNPFCLS LIVYLNKYLK TKIRKEVYNT KMASSSMSSS WTSKQNKIFE RALAVYDKDT  60
PDRWQNVAKA VGSKSAEEVK RHYDILVEDI KNIEQDLVPL PKYKTIDVGS KSRGINDFDL  120
RLMKNMRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-3032129193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893561e-128AC189356.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436473.16e-67PREDICTED: protein RADIALIS-like 5
SwissprotQ8GW756e-56RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A087HPN23e-58A0A087HPN2_ARAAL; Uncharacterized protein
STRINGA0A087HPN25e-59(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.15e-58RAD-like 5