PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC770_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 322aa    MW: 35747.9 Da    PI: 9.9805
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC770_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.5e-11169215453
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                ++  rE++RRdr+N++f eL +++ +    +++K +K++i   A++ +++
  RrC770_p4 169 SKACREKQRRDRLNDKFTELSSVMEPG---RAPKTDKVAIISDAIRMVNQ 215
                5678**********************9...9**************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004144.1E-554123IPR002119Histone H2A
SuperFamilySSF471137.04E-40699IPR009072Histone-fold
CDDcd000745.54E-55999No hitNo description
Gene3DG3DSA:1.10.20.103.6E-4810101IPR009072Histone-fold
PfamPF001252.8E-131490IPR007125Histone H2A/H2B/H3
PRINTSPR006201.9E-391537IPR002119Histone H2A
PROSITE patternPS0004602329IPR032458Histone H2A conserved site
PRINTSPR006201.9E-394459IPR002119Histone H2A
PRINTSPR006201.9E-395972IPR002119Histone H2A
PRINTSPR006201.9E-397387IPR002119Histone H2A
PROSITE profilePS5088812.474165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.26E-7168221No hitNo description
SuperFamilySSF474591.03E-11169235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11169238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-8169215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-6171222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAGRGKTLGS GAVKKATSRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLSAVLEYL  60
AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELKMVFP ENTNWLSDYP LIDGVFSHHQ  120
SPTFPWQIHG SATTVSVEEV DGFLCDSDVI KEPGSKKRIK PESCAGSSSK ACREKQRRDR  180
LNDKFTELSS VMEPGRAPKT DKVAIISDAI RMVNQARDEA QRLKDLNSGL QEKIKELKEE  240
KNELRDEKQK LKIEKERIEQ QLKAINTSQP CFLPNPPTLA QAQAPGSKLV PFTTYPGFAM  300
WQFMPPATVD TSQDHVLRPP VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1eqz_A3e-4611031102PROTEIN (HISTONE H2A)
1eqz_E3e-4611031102PROTEIN (HISTONE H2A)
1hq3_A3e-4611031102HISTONE H2A-IV
1hq3_E3e-4611031102HISTONE H2A-IV
1tzy_A3e-4611031102Histone H2A-IV
1tzy_E3e-4611031102Histone H2A-IV
2aro_A3e-4611031102Histone H2A-IV
2aro_E3e-4611031102Histone H2A-IV
6c0w_C4e-4611211127Histone H2A
6c0w_G4e-4611211127Histone H2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886320.0AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0856190.0AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBankBT0024330.0BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493058.11e-160PREDICTED: transcription factor bHLH115
SwissprotQ9C6821e-141BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A397ZE541e-150A0A397ZE54_BRACM; Uncharacterized protein
STRINGBra030459.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-127bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]