PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7609_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 295aa    MW: 32556.7 Da    PI: 9.7617
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7609_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-07757348
                     SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                      W+ eE++ + + ++++  +      +W + a++++ +++l ++k ++q +l
       RrC7609_p1  7 TWSREEEKSFENSIALHCVKeeitedQWMKMASMVP-TKSLQEVKKHYQVLL 57
                     6****************999****************.************986 PP
2Myb_DNA-binding42.21.9e-13129173347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
       RrC7609_p1 129 PWTQEEHRLFLLGLEKFGKGDWRSISRNFVITRTPTQVASHAQKY 173
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.858361IPR017884SANT domain
SMARTSM007170.0055459IPR001005SANT/Myb domain
CDDcd001672.50E-5757No hitNo description
SuperFamilySSF466891.24E-7864IPR009057Homeodomain-like
PROSITE profilePS5129417.245122178IPR017930Myb domain
SuperFamilySSF466892.17E-17123179IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-17125176IPR006447Myb domain, plants
SMARTSM007173.2E-11126176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-11127172IPR009057Homeodomain-like
CDDcd001671.41E-10129174No hitNo description
PfamPF002497.4E-12129173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MESVAVTWSR EEEKSFENSI ALHCVKEEIT EDQWMKMASM VPTKSLQEVK KHYQVLLEDV  60
KAIESGQVPL PRYQRTGEEA AATSPANRDC HSSGGGGSTE KKPNHGISSS NGGGRSSSRQ  120
EQERKKGIPW TQEEHRLFLL GLEKFGKGDW RSISRNFVIT RTPTQVASHA QKYFIRLNSM  180
NRDRRRSSIH DITSVNNQAA AVTGQQQQQQ QVVKHRPAQP QPQHHTMAGL GMYGGAPVGQ  240
PIIAPPDHMG SAVGTPVMLP LPMGTHHHLG VAPYAVPSYP VPPLPQQHPA PSTMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-148771177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0869061e-94AY086906.1 Arabidopsis thaliana clone 29302 mRNA, complete sequence.
GenBankAY5195281e-94AY519528.1 Arabidopsis thaliana MYB transcription factor (At1g49010) mRNA, complete cds.
GenBankBT0248621e-94BT024862.1 Arabidopsis thaliana At1g49010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022565421.10.0transcription factor MYBS1-like
SwissprotQ9FNN62e-74SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A397YCH40.0A0A397YCH4_BRACM; Uncharacterized protein
STRINGBo6g018000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-119MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]