PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7601_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 382aa    MW: 44142.9 Da    PI: 6.5528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7601_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05108132123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 y+C    C+k F ++s LkrH   H
  RrC7601_p1 108 YVCDypGCDKKFLDSSKLKRHWLIH 132
                 89*******************9988 PP
2zf-C2H220.51.3e-06138162123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   Cgk Fs   nL++H++tH
  RrC7601_p1 138 FVCTyeGCGKAFSLDFNLRSHMKTH 162
                 89**********************9 PP
3zf-C2H213.50.00022168193123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 + Cp   Cgk++ + + Lk+H    H
  RrC7601_p1 168 HICPysGCGKRYAHEYKLKNHVAAyH 193
                 68*******************87666 PP
4zf-C2H2130.00032231256123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y Cp   C k + + + Lk H+++ H
  RrC7601_p1 231 YACPyeGCEKAYIHEYKLKLHLKReH 256
                 89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-1474105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01579103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63779108IPR007087Zinc finger, C2H2
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
SuperFamilySSF576678.91E-982132No hitNo description
Gene3DG3DSA:3.30.160.601.8E-14106128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0025108132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.404108137IPR007087Zinc finger, C2H2
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-14119173No hitNo description
Gene3DG3DSA:3.30.160.601.3E-19129164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.757138167IPR007087Zinc finger, C2H2
SMARTSM003557.2E-4138162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-7165189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0074168193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
SuperFamilySSF576673.73E-6225254No hitNo description
Gene3DG3DSA:3.30.160.601.6E-9226253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.533231261IPR007087Zinc finger, C2H2
SMARTSM003550.012231256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEQYPYQNPF ERRPIVKSKA PAVKWIKEWV PQDIVATGGK CYLHKWVTEE TVKRLKETEK  60
EPTTDVPDPE PEPTSEILFL CSYEGCGKMF FDVSALRKHS HIHGERQYVC DYPGCDKKFL  120
DSSKLKRHWL IHTGARDFVC TYEGCGKAFS LDFNLRSHMK THSQENYHIC PYSGCGKRYA  180
HEYKLKNHVA AYHEKNAAGD TPKYTPPAEK VSRTPKTPAT VYGSATSERP YACPYEGCEK  240
AYIHEYKLKL HLKREHPGHL PEENAENPTP NKHELEEGSD QDFYRKHASN GKNQTHNKLQ  300
SRAKPNMRTP PAKARKKGST SSPAKARIAK KPWQVKETYE GEREEEEEDS EETEEDRENV  360
DDGWRFGGNN EEEDDEETED ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C8e-37811928117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452281.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_018452282.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L30.0YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A0D2ZRD70.0A0A0D2ZRD7_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QHG70.0A0A3N6QHG7_BRACR; Uncharacterized protein
TrEMBLA0A3P6EJX00.0A0A3P6EJX0_BRAOL; Uncharacterized protein
STRINGBo00829s040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.10.0C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]