 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC7577_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB |
| Protein Properties |
Length: 277aa MW: 31348.6 Da PI: 8.3864 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC7577_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+lv+++kq g+W+t +++ g+ R++k+c++rw +yl
RrC7577_p1 25 KGPWTPEEDEILVEYIKQNSHGSWRTLPKKSGLLRCGKSCRLRWTNYL 72
79******************************99************97 PP
|
| 2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 78 | 123 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T eE++l v++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
RrC7577_p1 78 RGPFTLEEEKLVVQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 123
89********************.*********.************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MFVHLASEVI KMGRRPCCDK KGLKKGPWTP EEDEILVEYI KQNSHGSWRT LPKKSGLLRC 60
GKSCRLRWTN YLRPDIKRGP FTLEEEKLVV QLHAILGNRW AAIAAQLPGR TDNEIKNLWN 120
THLKKRLLSM GLHPKTHEPL PSYGFAKQAP ASPTTRHMAQ WESARVEAEA RLSRESTLVK 180
SDCDHFLRIW NSEIGESFRN IAPSDQSTTS QSLSSRTTSS SSTLVGKEIV VRTHGSDSSP 240
CWNNLEDVSS DSAFQLLLDF PISDDDMSFL EENISLF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY519601 | 1e-152 | AY519601.1 Arabidopsis thaliana MYB transcription factor (At3g61250) mRNA, complete cds. |
| GenBank | BT033129 | 1e-152 | BT033129.1 Arabidopsis thaliana unknown protein (At3g61250) mRNA, complete cds. |
