 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC7473_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB |
| Protein Properties |
Length: 258aa MW: 29274.5 Da PI: 6.8462 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC7473_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 45.5 | 1.7e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WTteEd++l++ + G +W++ ++ g++R++k+c++rw +yl
RrC7473_p1 14 RGPWTTEEDKKLINFILTNGHYCWRALPNLAGLRRCGKSCRLRWTNYL 61
89******************99************************97 PP
|
| 2 | Myb_DNA-binding | 50.2 | 6e-16 | 71 | 111 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+ +E++l +d+++ +G++ W++Ia++++ gRt++++k++w+++
RrC7473_p1 71 SHDEEQLVIDLHAHMGNK-WSKIASRLP-GRTDNEIKNHWNTH 111
789***************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MGRQPCCDKL GVKRGPWTTE EDKKLINFIL TNGHYCWRAL PNLAGLRRCG KSCRLRWTNY 60
LRPDLKRGLL SHDEEQLVID LHAHMGNKWS KIASRLPGRT DNEIKNHWNT HIKKKLVKMG 120
IDPVTHQPLN QEPNNTDDNS MEPKSSSTKN VETNGITKEN ESSSTVTGQN SSMDSESHLL 180
SNIYNDEQLF SYLWSDESTK AETAWSDGNY DIGGTLYHDS NISGGGADFP IWSPQINKGK 240
NWTFQDSCQD FGVHDFGF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF175993 | 1e-128 | AF175993.2 Arabidopsis thaliana putative transcription factor (MYB85) mRNA, complete cds. |
| GenBank | AK175718 | 1e-128 | AK175718.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-25-P15. |
| GenBank | AK175777 | 1e-128 | AK175777.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-35-I17. |
| GenBank | AY085497 | 1e-128 | AY085497.1 Arabidopsis thaliana clone 154343 mRNA, complete sequence. |
| GenBank | AY519608 | 1e-128 | AY519608.1 Arabidopsis thaliana MYB transcription factor (At4g22680) mRNA, complete cds. |
| GenBank | DQ446863 | 1e-128 | DQ446863.1 Arabidopsis thaliana clone pENTR221-At4g22680 myb family transcription factor (At4g22680) mRNA, complete cds. |
| GenBank | DQ653218 | 1e-128 | DQ653218.1 Arabidopsis thaliana clone 0000012874_0000009286 unknown mRNA. |
