PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7442_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 309aa    MW: 35220.4 Da    PI: 8.5963
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7442_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.11.9e-3286139559
  ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +YkeClkNhAas+Ggha+DGCgEfmps geeg+++al+C+AC+CHRnFHRre e 
   RrC7442_p1  86 KYKECLKNHAASTGGHAIDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRREIEG 139
                  8*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2486147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-2986137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-3186137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.06887136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.59E-19210279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-29214280IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-27218275IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEVASQEKHD MPIPISTSYN GGHGHMIHRH HDHRHHHPAN STHPNPLIVP SNVNGLGKNH  60
DHPHHHVDYN MISSNKDNKE KPVVNKYKEC LKNHAASTGG HAIDGCGEFM PSGEEGSIEA  120
LTCSACNCHR NFHRREIEGE EKTYFSPYLH NQPHRKIMFH HHHKMTKSPL PQQMIMPIGV  180
AAAAVSNSES EDQMEEDGGG NLPFRQPPPY IYGGHNQKKR FRTKFTPEQK EKMLSFAERI  240
GWKMQRQEES VVQQFCQEIG VRRRVLKVWI HNNKYNLSKK SNNVNNDVET SAGNNDINKL  300
LTEKLASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-232192741873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437406.10.0PREDICTED: zinc-finger homeodomain protein 3-like
SwissprotO647221e-139ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A3P6B0I51e-171A0A3P6B0I5_BRACM; Uncharacterized protein
STRINGBra026589.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-128homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]