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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC7430_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 317aa MW: 35801.8 Da PI: 7.0166 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC7430_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 159 | 1.9e-49 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99
lppGfrF Ptdeel+veyL++k++g++++l + i+e+d+yk++ w Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + + +g+
RrC7430_p1 14 LPPGFRFYPTDEELMVEYLCRKAAGHDFSL-QLIAEIDLYKFDAWVLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVIST-EGRR 110
79***************************9.89***************8777899**********************************99999.9999 PP
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
vg+kk Lvfy g+apkg+kt+W+mheyrl
RrC7430_p1 111 VGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MGIQEVDPLA QLSLPPGFRF YPTDEELMVE YLCRKAAGHD FSLQLIAEID LYKFDAWVLP 60 SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVISTEGRR VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLI EPSRRYGSTK LDDWVLCRIY KKQSSAQKQV YSNLMTSVRE 180 YSNDGSSTSS SSHQYNDVLE SLHEIDNRSL GFAAGSSNAP PHHSQRTSLT EQKTGFLNLA 240 REPSFDWPSY GGHTSVPQLT PSHNVPSFCY GEGSGYFQSV KTNEEDDRNQ QQAEGFSVDP 300 VNGFPNSDQQ HDAFGFI
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Strongly induced by high salinity. Slightly up-regulated by drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold treatment. {ECO:0000269|PubMed:15319476}. |
Publications
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- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Zheng XY, et al.
Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation. Cell Host Microbe, 2012. 11(6): p. 587-96 [PMID:22704619] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Zhu X, et al.
Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] - Takasaki H, et al.
SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] - Gimenez-Ibanez S, et al.
JAZ2 controls stomata dynamics during bacterial invasion. New Phytol., 2017. 213(3): p. 1378-1392 [PMID:28005270] - Hickman R, et al.
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376] - Fu Y,Ma H,Chen S,Gu T,Gong J
Control of proline accumulation under drought via a novel pathway comprising the histone methylase CAU1 and the transcription factor ANAC055. J. Exp. Bot., 2018. 69(3): p. 579-588 [PMID:29253181]
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