PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7332_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 747aa    MW: 83393.9 Da    PI: 7.0023
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7332_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.2e-2194149156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  RrC7332_p1  94 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 149
                 7999************************************************9877 PP
2START227.83.2e-712574861206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                 e+a++a+ el+k+ +++ep+W +s     e++n+de+l++f+++++      +++ea+r++g+v+m++++l ++++d+  qW+e++a    ka+t++vi
  RrC7332_p1 257 EIANRATLELQKMSTSGEPLWLRSLetgrEILNYDEYLKEFPQAQGssfhgrKTIEASRDVGIVFMDAHKLAQSFMDVE-QWKEMFAclisKATTVDVI 354
                 578999***************************************9*********************************.******************* PP

                 CTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
       START  86 ssg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                 ++g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w+ivdvSv++e+++++   + s+ R++++pSg++ie++snghskvtwveh dl+
  RrC7332_p1 355 RQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWAIVDVSVSVEEDNNNtekEGSLLRCRKRPSGCIIEDTSNGHSKVTWVEHLDLS 453
                 *******************************************************9999988788899******************************* PP

                 SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                 +++++ l+rs+v++gla+ga++wvatlq +ce+
  RrC7332_p1 454 ASTVQPLFRSFVNTGLAFGARHWVATLQLHCER 486
                 *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2280145IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2086152IPR009057Homeodomain-like
PROSITE profilePS5007117.81591151IPR001356Homeobox domain
SMARTSM003899.6E-1893155IPR001356Homeobox domain
PfamPF000462.6E-1894149IPR001356Homeobox domain
CDDcd000866.56E-1698149No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PROSITE profilePS5084843.348248489IPR002913START domain
SuperFamilySSF559611.37E-31251486No hitNo description
CDDcd088756.44E-108252485No hitNo description
PfamPF018523.6E-64257486IPR002913START domain
SMARTSM002341.8E-79257486IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-8298485IPR023393START-like domain
SuperFamilySSF559611.92E-15515733No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MAVEMSSKQP TKDFFSSPAL SLSLAGIFRN ASSGSTNPEE DFLGRRVADD EDRTVEMSSE  60
NSGPTRSRSE DNLEGEEDQE EEDGAGNKGN KRKRKKYHRH TTDQIRHMEA LFKETPHPDE  120
KQRQQLSKQL GLAPRQVKFW FQNRRTQIKA IQERHENSLL KAELEKLRDE NKAMRESFSK  180
ANSSSCPSCG GGGGGGSPDD LHLENTKLKA ELDKLRAALG RTPYPLQASC SDDQQRRVGS  240
LELYTGVFAL EKSRIVEIAN RATLELQKMS TSGEPLWLRS LETGREILNY DEYLKEFPQA  300
QGSSFHGRKT IEASRDVGIV FMDAHKLAQS FMDVEQWKEM FACLISKATT VDVIRQGEGP  360
SRIDGAIQLM FGEMQLLTPV VPTREVYFVR SCRQLSPEKW AIVDVSVSVE EDNNNTEKEG  420
SLLRCRKRPS GCIIEDTSNG HSKVTWVEHL DLSASTVQPL FRSFVNTGLA FGARHWVATL  480
QLHCERLVFF MATNVPTKDS LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWNKITT  540
KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPTLL FDFFRDESRR HEWDVLSNGA  600
HVQSIVSLSK GQDRGNSVSI QTVKSREKST WVLQDSCTNS YESVVVYAPV DINTTQLVIA  660
GHDPSSIQIL PCGFSIIPDG VESRQLVISS SQEDRNTQGG SLLTLALQTL INQSPAAKLN  720
MESVESVTNL VSVTLHNIKR SLQIEDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1882100.0KF188210.1 Brassica villosa BVGL2 (BVGL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445476.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLU3PGI60.0U3PGI6_9BRAS; BVGL2
STRINGBo6g079990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]