PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 287aa MW: 31669.2 Da PI: 6.9627

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC731_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.9	1.3e-14	141	185	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky RrC731_p2 141 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 185 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	6.592	33	86	IPR017884	SANT domain
SMART	SM00717	3.6E-7	34	86	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.15E-9	37	88	IPR009057	Homeodomain-like
CDD	cd00167	2.11E-6	37	83	No hit	No description
PROSITE profile	PS51294	20.491	134	190	IPR017930	Myb domain
SuperFamily	SSF46689	4.34E-17	136	190	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-17	137	189	IPR006447	Myb domain, plants
SMART	SM00717	3.2E-13	138	188	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-12	138	184	IPR009057	Homeodomain-like
CDD	cd00167	1.31E-11	141	186	No hit	No description
Pfam	PF00249	4.9E-13	141	185	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEILRPATTS HVSGGNWLME ETKSNVPPVA ASSDATTWTV AENKAFENAL AVYDDNTPDR 60 WQKVAAAIPG KTVSDVIKQY NDLEADLSSI EAGLIPVPGY ITSSFTLDWG GCNGFKPGHP 120 VGNRRSPAGR TPELERKKGV PWTEEEHKLF LMGLKKYGKG DWRNISRNFV ITRTPTQVAS 180 HAQKYFIRQH SGGKDKRRAS IHDITTVNLE DQASLETNKS SIVGREQRSR LDAFPWSQTD 240 NNGTHADAFN ITIGNAISGV HSYGQALLGP FNTADSCYDE QNTMYQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-17	38	103	11	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118891	0.0	AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07.
GenBank	AY519533	0.0	AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds.
GenBank	BT005473	0.0	BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018473188.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-101	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	M4CRA0	0.0	M4CRA0_BRARP; Uncharacterized protein
STRING	Bra006741.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1228	27	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	0.0	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]