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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC7304_p1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
HD-ZIP |
| Protein Properties |
Length: 178aa MW: 20673.6 Da PI: 9.6423 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC7304_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.7 | 4.8e-19 | 26 | 79 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t eq++ Le+ Fe+++++ e+++eLAk lgL++rqV vWFqNr+a+ k
RrC7304_p1 26 KKRRLTFEQVNMLEKSFEEDNKLEPERKTELAKVLGLPKRQVAVWFQNRKARCK 79
5568999*********************************************98 PP
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| 2 | HD-ZIP_I/II | 120.8 | 6.9e-39 | 25 | 115 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl+ eqv++LE+sFee++kLeperK+ela+ Lgl +rqvavWFqnr+AR k kq+E+dy++Lk++yd+l +++e++ +e+e+L +++
RrC7304_p1 25 EKKRRLTFEQVNMLEKSFEEDNKLEPERKTELAKVLGLPKRQVAVWFQNRKARCKVKQIERDYDVLKACYDSLLAKHESVISENEKLISKV 115
69*************************************************************************************9876 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 178 aa
Download sequence Send
to blast |
MYPKHDQESR SRSVPTGAIN NQRAEKKRRL TFEQVNMLEK SFEEDNKLEP ERKTELAKVL 60
GLPKRQVAVW FQNRKARCKV KQIERDYDVL KACYDSLLAK HESVISENEK LISKVLTLTK 120
MLPPATNQTQ RNFQVKLNSK GDDESMSSSA ALVPLANDHY FTNVDETFGW WVWPSNLM
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
| UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232548 | 1e-101 | AC232548.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010J09, complete sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Arce AL,Chan RL
A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
Plant Physiol., 2017. 175(3): p. 1238-1253
[PMID:28956754]
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