PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7299_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 312aa MW: 35500.5 Da PI: 9.4965 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25.4 | 3e-08 | 165 | 205 | 22 | 62 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 22 qRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +RKka++ eLe++vk Le+ N++L ++l++l++e lk+ RrC7299_p1 165 ERKKAYLGELENRVKDLENRNSELEERLSTLQNENLMLKQI 205 6**********************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07716 | 1.2E-4 | 165 | 198 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.5E-6 | 165 | 204 | No hit | No description |
CDD | cd14704 | 4.68E-10 | 165 | 199 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.4E-10 | 165 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MQALYRPAAR DPQALLLIWR SKKSAPRKIR KLQSVLKVCL SGLSLKYDEI TRIEGIKRPE 60 LLSAGSSSTA NERKLADVCA LNANEVTKLL RVFGAPSDAR IYWARGEPLR KKQHSKPSVM 120 VMAFHESDEE IRRVPEFGGE ATGKEISGRE SGGTGFEEQS FSTAERKKAY LGELENRVKD 180 LENRNSELEE RLSTLQNENL MLKQISNGSW NTFIDCDLCA WLVRVMNSEV PTPYCGYFVI 240 CEKIYSRTWN VTDGEVNEST IVHLLNSRSF FGKIKGSCTV AKFAEKPKRL LNSFDRQDYK 300 RSHFLNDLRH QG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 1e-20 | bZIP family protein |