PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7295_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 375aa MW: 41503.3 Da PI: 6.2244 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.0006 | 240 | 271 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L +l+ + +K + a++L +A+ YI+ Lq RrC7295_p1 240 RIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 271 677777777776.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.544 | 221 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-9 | 233 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.83E-5 | 233 | 275 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.2E-7 | 236 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MNRGVLESSP VQQLMAPGNP NWWNVSGGMR PPQPLMGHQH GPLPPQMTPN NYIRPQMMPT 60 LLPPFMPYPT TSSSSSSSPS LPNNPNLSSW LESNDLPPES WSLSQLLLGG LMMGEDERLE 120 MMNHHNHHDE QQHHNFQGRM RLENWEEQVL SHQQASMGVV DIKQESNINN RNGYLVPSPN 180 SPPNKSCVTT TTTTSLNSND DNNNSMLDFS SIHNGLNLSE GRHIPPDRSS EVRKEKLGGR 240 IAALHQLVSP FGKTDTASVL SEAIGYIRFL QSQIEALSHP YFGMTASGNT KHQQLLQGDR 300 SCLFPEDPGQ LLNDQCTKRR EASSLSMETQ NANEEPKKDL RSRGLCLVPI SCTLQIGSDN 360 GADYWAPALG SAGFH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352629 | 0.0 | AK352629.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-N24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018471779.1 | 0.0 | PREDICTED: transcription factor bHLH68 | ||||
Swissprot | Q8S3D1 | 0.0 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | M4D3M9 | 0.0 | M4D3M9_BRARP; Uncharacterized protein | ||||
STRING | Bra011083.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1872 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 1e-161 | bHLH family protein |
Publications ? help Back to Top | |||
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