PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TALE

Protein Properties

Length: 407aa MW: 45921.6 Da PI: 6.7437

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7242_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25	3.3e-08	295	332	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LA+++gL+ qV++WF N R + RrC7242_p1 295 FEHflHPYPKDLDKIMLARQTGLSRGQVSNWFINARVR 332 554459******************************88 PP
2	BELL	124.3	4.9e-40	157	228	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+rYkqy++ +q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+da+ +qi RrC7242_p1 157 ERQELQSKLTKLLSILDEVDRRYKQYYHHMQVVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAVWGQI 228 79*******************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.6E-63	97	226	IPR006563	POX domain
Pfam	PF07526	4.6E-46	103	224	IPR006563	POX domain
PROSITE profile	PS50071	11.272	273	336	IPR001356	Homeobox domain
CDD	cd00086	1.01E-10	276	337	No hit	No description
SMART	SM00389	2.2E-8	276	340	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.17E-17	277	344	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-26	279	342	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-17	293	332	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MIYTNPAVSY PETFPGEANN VSASKQIQVL SSFGGGASQM LEIQDSGSWR EDQEDNDRNC 60 FPVMMRPSTG QGLSLDLSSQ TETWRGDNNE YATQVVSGFT RTIHHSKYLK AAQELLDEAV 120 NVKKALKQFQ QEGDKVDEDK ENKLQESSTN PDIPQGERQE LQSKLTKLLS ILDEVDRRYK 180 QYYHHMQVVV SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAVWGQILV VRKSLGGEHD 240 GLDRKGVGIS RLRNVDKQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLIL RAWLFEHFLH 300 PYPKDLDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYNEEFTDTL QENGPNNVVA 360 SSSMGQNTVE HADNQFTMTR HGSGEMSLTL GIQNSDARGV VPICPDG

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MIYTNPAVSY PETFPGEANN VSASKQIQVL SSFGGGASQM LEIQDSGSWR EDQEDNDRNC  60
FPVMMRPSTG QGLSLDLSSQ TETWRGDNNE YATQVVSGFT RTIHHSKYLK AAQELLDEAV  120
NVKKALKQFQ QEGDKVDEDK ENKLQESSTN PDIPQGERQE LQSKLTKLLS ILDEVDRRYK  180
QYYHHMQVVV SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAVWGQILV VRKSLGGEHD  240
GLDRKGVGIS RLRNVDKQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLIL RAWLFEHFLH  300
PYPKDLDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYNEEFTDTL QENGPNNVVA  360
SSSMGQNTVE HADNQFTMTR HGSGEMSLTL GIQNSDARGV VPICPDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-14	282	340	5	63	Homeobox protein Meis2
3k2a_B	2e-14	282	340	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY056796	0.0	AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBank	BT000609	0.0	BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009121216.1	0.0	PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	0.0	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A3N6R4L6	0.0	A0A3N6R4L6_BRACR; Uncharacterized protein
STRING	XP_006409439.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2869	25	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	0.0	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]