PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC715_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 247aa    MW: 28599.5 Da    PI: 9.9315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC715_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.8e-1090137355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r h + Er RR++ ++++  L +llP a     +K +K +i+ekAv+ I++L+
  RrC715_p1  90 RQHMMKERTRREKQKQSYLGLHSLLPFA-----TKSNKNSIVEKAVDQIRKLE 137
                6799************************.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1185151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.88E-885141No hitNo description
Gene3DG3DSA:4.10.280.101.0E-786138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.86887136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-790137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-593142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDFFSLDSVF QEEGEKFWNM IAGEVSGDGD GDRTVSVLNR SAFRSFVRDN EQRMVSSSST  60
VNVKKRMVNL LRKNWEKKKI VAVPENERSR QHMMKERTRR EKQKQSYLGL HSLLPFATKS  120
NKNSIVEKAV DQIRKLEGLK KELERRMNVL EAKSARDHDE MNGTKVRFNV QEPLSGIDSV  180
VEVLQCLKSM GTNLNTVQAN FFPHEFSATM NIETQIRGDE VEKRVQKRLQ ETEWKLLSLP  240
EASFLND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894021e-138AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
GenBankAC1895911e-138AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467064.11e-173PREDICTED: transcription factor bHLH92-like
SwissprotQ9FIX51e-115BH092_ARATH; Transcription factor bHLH92
TrEMBLA0A397Z4R01e-148A0A397Z4R0_BRACM; Uncharacterized protein
STRINGXP_006403210.11e-132(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-117bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]