PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SBP

Protein Properties

Length: 384aa MW: 43112.9 Da PI: 8.2734

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7158_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.9	3.8e-40	168	244	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gC+ dls+ak+yhr+h+vCe hsk+p+v+v g+e+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q RrC7158_p2 168 RCQIDGCQLDLSSAKDYHRKHRVCENHSKCPKVTVGGVERRFCQQCSRFHAVSEFDETKRSCRKRLSHHNARRRKPQ 244 6**************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-32	162	230	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.171	166	243	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-37	167	244	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.6E-31	169	242	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDCNMRSPFL WDLEHLILPN PSESVNDKDQ LTTTTEWETD KGEGIESILP CFNGLERVSS 60 LWDTPVSKSS QSTSTNSSSP QPKQRMLASE ASPRSSNIDL VQVKAPPTAL DASPESDLSL 120 KLGKRTYSEE LWGGRNNNNN NDISAVSVKL LTRKKSKASC GQSIQVPRCQ IDGCQLDLSS 180 AKDYHRKHRV CENHSKCPKV TVGGVERRFC QQCSRFHAVS EFDETKRSCR KRLSHHNARR 240 RKPQGVFPFN PDRVYDGRQH TNMLWNGLSL NTRSEEKFAW DDTYDTKPTQ TESGFTLSFQ 300 RGNGSEQQMF ASNNHSFSAY QTSAGKPKFQ LHGQGGVGEY SGVLHESQDF HRALSLLSTS 360 SDPMMVQPHT QPFSLLFSYD GVPK

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDCNMRSPFL WDLEHLILPN PSESVNDKDQ LTTTTEWETD KGEGIESILP CFNGLERVSS  60
LWDTPVSKSS QSTSTNSSSP QPKQRMLASE ASPRSSNIDL VQVKAPPTAL DASPESDLSL  120
KLGKRTYSEE LWGGRNNNNN NDISAVSVKL LTRKKSKASC GQSIQVPRCQ IDGCQLDLSS  180
AKDYHRKHRV CENHSKCPKV TVGGVERRFC QQCSRFHAVS EFDETKRSCR KRLSHHNARR  240
RKPQGVFPFN PDRVYDGRQH TNMLWNGLSL NTRSEEKFAW DDTYDTKPTQ TESGFTLSFQ  300
RGNGSEQQMF ASNNHSFSAY QTSAGKPKFQ LHGQGGVGEY SGVLHESQDF HRALSLLSTS  360
SDPMMVQPHT QPFSLLFSYD GVPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-25	169	242	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00161	DAP	Transfer from AT1G27360	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353392	1e-175	AK353392.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-42-E20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492233.1	0.0	PREDICTED: squamosa promoter-binding-like protein 11 isoform X1
Swissprot	Q9FZK0	0.0	SPL11_ARATH; Squamosa promoter-binding-like protein 11
TrEMBL	A0A397YJ76	0.0	A0A397YJ76_BRACM; Uncharacterized protein
STRING	Bo7g049950.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5004	16	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27360.4	1e-176	squamosa promoter-like 11

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Stief A, et al. Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors. Plant Cell, 2014. 26(4): p. 1792-1807 [PMID:24769482] Liu J, et al. The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice. PLoS Pathog., 2015. 11(2): p. e1004629 [PMID:25658451] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]