 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC707_p8 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C3H |
| Protein Properties |
Length: 352aa MW: 38902.7 Da PI: 7.9128 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC707_p8 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 29.6 | 1.2e-09 | 34 | 57 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
++ C ++++t tCk+G+ CkF H+
RrC707_p8 34 EKDCTHYMQTRTCKFGEGCKFDHP 57
678********************8 PP
|
| 2 | zf-CCCH | 34.6 | 3.1e-11 | 83 | 109 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+++ +t CkyG rCkF+H++
RrC707_p8 83 PGEPDCPYYVKTQRCKYGVRCKFNHPK 109
5789*********************96 PP
|
| 3 | zf-CCCH | 39.5 | 9.5e-13 | 128 | 152 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C f+++tG Ck+G +CkF+H++
RrC707_p8 128 EAPCTFYMKTGKCKFGLTCKFNHPK 152
789********************96 PP
|
| 4 | zf-CCCH | 33.1 | 9.4e-11 | 254 | 272 | 8 | 26 |
GGGGTS--TTTTT-SS-SS CS
zf-CCCH 8 ffartGtCkyGdrCkFaHg 26
++++tG+Ck+G+rC+F+H+
RrC707_p8 254 YYMKTGECKFGERCRFHHP 272
9*****************8 PP
|
| 5 | zf-CCCH | 41.8 | 1.7e-13 | 304 | 326 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
+C+++++tGtCkyG++CkF H+p
RrC707_p8 304 NCPYYMKTGTCKYGATCKFDHPP 326
7********************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.521 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.83E-5 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.41 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.4E-7 | 34 | 57 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.2E-4 | 37 | 56 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.873 | 82 | 110 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.1E-5 | 82 | 109 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.5E-8 | 84 | 109 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.14E-5 | 87 | 109 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 88 | 107 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.084 | 125 | 153 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.2E-5 | 125 | 152 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.59E-6 | 128 | 153 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.8E-10 | 128 | 152 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 130 | 151 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.4 | 250 | 273 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.49E-5 | 254 | 277 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.7E-8 | 254 | 272 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.3E-5 | 254 | 274 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 10.718 | 254 | 274 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.375 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.1E-7 | 299 | 326 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.0E-11 | 303 | 326 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.1E-6 | 303 | 326 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.3E-6 | 305 | 324 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MGQTEAWYTT DYLTKRLKLE TTSHLPVYPQ RAGEKDCTHY MQTRTCKFGE GCKFDHPIWV 60
PEGGIPDWKE APVVPNDEYP ERPGEPDCPY YVKTQRCKYG VRCKFNHPKT AAAVTVENPD 120
ALPERPSEAP CTFYMKTGKC KFGLTCKFNH PKDIQLPSSS QDNGSTEAVT SDPDAINNPH 180
VTFAPAAYHN SKGLPVRPGE YGATCRYNHP ERTAFTPQAT GINYPLVSPT AASVNLGLIN 240
SAASLYQTLA QPTYYMKTGE CKFGERCRFH HPADRLNATS KQAPQQPNVK LSLAGYPRRE 300
GAQNCPYYMK TGTCKYGATC KFDHPPPGEV MAKTASEADA PPPGEGTDTT TQ
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
