PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7070_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 302aa    MW: 34056.4 Da    PI: 6.2338
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7070_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-14111162155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+++  A+++I++L+
  RrC7070_p1 111 QRMTHIAVERNRRRQMNEYLSVLRSLMPES---YVQRCDQASTVGGAINFIRELE 162
                 79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.16E-12109166No hitNo description
SuperFamilySSF474592.36E-15110172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-13110166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.637110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALEGAISQH SYNGKEAYSN IYADNEPPFS DLQAALCFLD YQTDDYDSTF LQEGYYGNTT  60
TFLHQPPNEI VVNEQKPTAN CDISFHGDMG NNQVTRRRTR AKKNKEEISN QRMTHIAVER  120
NRRRQMNEYL SVLRSLMPES YVQRCDQAST VGGAINFIRE LEHRLHLQNL SCDPNEISLS  180
GSCMSSATPF SDTFKLPQFS MGSSSVSDNM VVKVNALADI EVSLVESHAT LKIRSRRRPK  240
VLFNLVSGLQ SLGFIILHLN VSTVSDFVLY CFSTKMEDCC RLSSVADIAT AVYEMLKMHN  300
DS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111122RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730047.10.0transcription factor bHLH96
SwissprotQ9C7T44e-63BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A078JGA70.0A0A078JGA7_BRANA; BnaC09g51650D protein
TrEMBLA0A3P6DTB20.0A0A3P6DTB2_BRAOL; Uncharacterized protein
STRINGBo9g055890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]