PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 148aa MW: 16641.5 Da PI: 10.2231

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7044_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.4	1.6e-12	54	95	16	55
AP2 16 vAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +AeIr+p++ +g +kr +lg+f+ta eAa a+++a+ +++g RrC7044_p2 54 RAEIREPVNqRGgNSKRLWLGTFDTAAEAALAYDRAASAMYG 95 69**888777677********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	15.369	41	103	IPR001471	AP2/ERF domain
SMART	SM00380	7.4E-14	48	109	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.16E-13	54	105	IPR016177	DNA-binding domain
CDD	cd00018	5.80E-18	54	104	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.5E-18	55	104	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-6	62	95	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MEKEDNVSNQ SSSASVEPSR RRRRRRVAEP VDTTLSKWVK EEEGLKKVRR VQARAEIREP 60 VNQRGGNSKR LWLGTFDTAA EAALAYDRAA SAMYGRYARL NFPDRLGNCP GGEMNDKPGS 120 SRSYWLETSN VSETGNSLID KKDGKGYL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	25	RRRRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:21069430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269\|PubMed:11798174}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634722.1	1e-67	PREDICTED: dehydration-responsive element-binding protein 2E
Refseq	XP_013704026.1	1e-67	dehydration-responsive element-binding protein 2E-like
Refseq	XP_013705373.1	1e-67	dehydration-responsive element-binding protein 2E-like
Swissprot	O80917	2e-28	DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBL	A0A078JBN6	2e-66	A0A078JBN6_BRANA; BnaC04g53380D protein
STRING	Bo4g027470.1	5e-67	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14249	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38340.1	6e-22	ERF family protein

Publications ? help Back to Top
Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]