PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 319aa MW: 35248.2 Da PI: 7.2956

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7041_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.8	1.6e-42	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vhk+FGasnv kll++l ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l++l+++l+ +++ RrC7041_p1 9 PCAACKFLRRKCTQECVFAPYFPPDQPHKFAYVHKIFGASNVAKLLNDLVSNQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKKLQHDLDNANK 107 7*********************************************************************************************99987 PP DUF260 100 e 100 e RrC7041_p1 108 E 108 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.7E-89	6	318	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	26.842	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-42	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MASSSSSSPC AACKFLRRKC TQECVFAPYF PPDQPHKFAY VHKIFGASNV AKLLNDLVSN 60 QREDAVNSLF YEAEARLRDP VYGCVGLISI LQHRLKKLQH DLDNANKELA SYSAPNAMLP 120 MHPQPNFMSL PPQPQRPSSA SSSASVLTQQ QLHNLLPMLT IPTEQLVYHQ QHQDIFETQQ 180 LATVNAVARD QHNEMFRAYG GGSNSPHHHQ NQPQVDILRF NSGFDSVPTG SVTTTGFNQL 240 SSGGSTKTRM SPSLARDGNV VESPPSNDNY HTYEQLHHHQ QHNGAQLFIP TQSSQPLPLQ 300 TQPNSGSQED GRSLIGSSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-49	3	114	5	116	LOB family transfactor Ramosa2.1
5ly0_B	4e-49	3	114	5	116	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018459866.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-137	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A078IG08	1e-163	A0A078IG08_BRANA; BnaC02g44040D protein
TrEMBL	A0A0D3AYV3	1e-163	A0A0D3AYV3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6D8V6	1e-163	A0A3P6D8V6_BRAOL; Uncharacterized protein
STRING	Bo2g167820.1	1e-163	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8008	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-113	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]