PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6956_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 272aa    MW: 29538.2 Da    PI: 8.3139
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6956_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00086180202123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+  Fs+   L  H+r+H
  RrC6956_p2 180 HECSICKAEFSSGQALGGHMRRH 202
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.3E-9113136No hitNo description
PfamPF139129.1E-12113138IPR007087Zinc finger, C2H2
SMARTSM003550.13114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576672.3E-9175202No hitNo description
Gene3DG3DSA:3.30.160.605.1E-4177204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-12179204IPR007087Zinc finger, C2H2
SMARTSM003550.031180202IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328180207IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTSFHEETRL VLLTKGKRTK RPRSASPHMN AEAVSGVCSE DRSLEAKEEG AGEVEFQGAT  60
EEDQDMANCL MLLSQGHKAK SSGDHLLTQK IGFLSNKKQK PVASSLGLGL DGVYPCKTCD  120
KRFHSFQALG GHRASHKKPK RDEKNSSSAV ETVETAEAVG SFLSLQVSSS DGSKKPEKTH  180
ECSICKAEFS SGQALGGHMR RHRGLTVNAN ATSVTKTALS SSRHQEPNHP KNILELDLNL  240
PAPEDEPKYV FASKNQMLLF ASASNSLIDC HH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468342.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A3P5ZWJ31e-175A0A3P5ZWJ3_BRACM; Uncharacterized protein
STRINGBra028831.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-137C2H2 family protein