PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC688_p6

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 203aa MW: 22775.3 Da PI: 4.8893

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC688_p6	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.1	4e-12	12	49	2	38
---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 ie k+ ++v f+kRrng++ KA EL+ L +++a++ RrC688_p6 12 EIEKKTVKSVAFTKRRNGLFRKAAELCLLSsSTQIAIL 49 79***************************725777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.0E-8	3	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.241	3	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-8	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.72E-14	5	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-10	13	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-8	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MGGTKRKIKI EEIEKKTVKS VAFTKRRNGL FRKAAELCLL SSSTQIAILA TPPSTNSHAA 60 FYSFGHSSVD HVVSSLLNGR CPLPTEQENK SGLGFWWEDE GFERSENIDE LKEATDAVSR 120 MLNNLRLRLN ALKSNQSDGD LVIHQEEVLQ LCDTERNNNE EMTNQITRFE GASGSGSCLV 180 ENVEDNDLPH HEEFFSDAKI DQF

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00208	DAP	Transfer from AT1G60920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454191.1	1e-138	PREDICTED: agamous-like MADS-box protein AGL97
Refseq	XP_018454192.1	1e-138	PREDICTED: agamous-like MADS-box protein AGL97
TrEMBL	A0A0D3E567	1e-113	A0A0D3E567_BRAOL; Uncharacterized protein
STRING	Bo9g043530.1	1e-113	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60920.1	4e-62	AGAMOUS-like 55