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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC6851_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
SRS |
Protein Properties |
Length: 308aa MW: 33133.3 Da PI: 8.2266 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC6851_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 220.9 | 2.6e-68 | 87 | 238 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskke 99
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql+++++ + ++ +kr+r++ + +ss++l+s ++ e
RrC6851_p1 87 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTAGGGGGSgGSSIPKRHRDT---TLPGTSSSRLPSDSAGLE 182
67899****************************************************999887766578888888886...667778899999*9**** PP
DUF702 100 letsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
+ ++s+P+evss+a+frcv++s+vd+ g+ ++aYqt+v+igGh+fkGiLydqG+e+
RrC6851_p1 183 TGKASFPPEVSSDALFRCVKLSGVDNgGDGQYAYQTTVNIGGHLFKGILYDQGPES 238
**************************8899************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 308 aa
Download sequence Send
to blast |
MAGMYSLGGN NTNGDEEEGK QQQQKTNWVW YRSNTNTNNI NPSSSIWQIP PEQQILMHNH 60 QPHPQQQSID LYTGHQIDVS DLATSSRSIT ISCRDCGNQA KKDCTHMRCR TCCKSRGFDC 120 STHVRSTWIP VARRRERQQQ LHMSTAGGGG GSGGSSIPKR HRDTTLPGTS SSRLPSDSAG 180 LETGKASFPP EVSSDALFRC VKLSGVDNGG DGQYAYQTTV NIGGHLFKGI LYDQGPESSH 240 MSGGSGGSDH HSSSAGGGNT FNTPAIAGGR GGSSAMFVDP NSSSYYSSNM MTMFVPPGTQ 300 FYQNPPRS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU205265 | 0.0 | GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G36260.1 | 1e-121 | Lateral root primordium (LRP) protein-related |