PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6743_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 169aa MW: 19467 Da PI: 6.0006

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6743_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.9	5.7e-11	22	98	12	94
HTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 12 ksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + +l++p +f++++ ++++e+++t l++ s +W+v+l +++ +l GW +F+ an+L+ g +v+ +++g+ v+ RrC6743_p2 22 Q-TQLMIPSDFFSNYiketSLDSETTTTAELKSdYSDITWKVEL--TGR----ILNHGWGDFAVANNLQIGNVVLVRYEGDL----VF 98 3.469******999999777778888999886888*****..555....69********************98753....33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-14	10	104	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.334	10	106	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.94E-14	11	111	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.43E-12	11	101	No hit	No description
SMART	SM01019	2.3E-13	13	106	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MAKSTLLLLR PQFFHTLLPG FQTQLMIPSD FFSNYIKETS LDSETTTTAE LKSDYSDITW 60 KVELTGRILN HGWGDFAVAN NLQIGNVVLV RYEGDLVFHV SDLGASYSQI QHTNDDDDDD 120 ESSLMDIEKK KFQQKQRPVS YSSCHKRFVT FTLPPDYATI RRLVKYMNK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475787.1	6e-91	PREDICTED: B3 domain-containing protein REM13-like
Refseq	XP_018475788.1	6e-91	PREDICTED: B3 domain-containing protein REM13-like
Refseq	XP_018475789.1	6e-91	PREDICTED: B3 domain-containing protein REM13-like
Swissprot	P0CAP5	3e-31	REM13_ARATH; B3 domain-containing protein REM13
TrEMBL	M4C8N6	1e-67	M4C8N6_BRARP; Uncharacterized protein
STRING	Bra000564.1-P	2e-68	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13780	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24650.1	1e-33	DNA binding;DNA binding;sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Bindschedler LV,Palmblad M,Cramer R Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Phytochemistry, 2008. 69(10): p. 1962-72 [PMID:18538804] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]