 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC6669_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C2H2 |
| Protein Properties |
Length: 214aa MW: 24394.3 Da PI: 8.2248 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC6669_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.6 | 9.3e-05 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C + F++ L H+++H
RrC6669_p2 39 YSCNFCRREFRSAQALGGHMNVH 61
99*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 214 aa
Download sequence Send
to blast |
MEKPGGVWIP KKSNKESSWE ELAFAEDDAA GSLWPPRSYS CNFCRREFRS AQALGGHMNV 60
HRRDRARLKQ SEDQYLFSKS SSPPEYPSHN YSDDILPFME GSKKRKIDRD VPKNGDKTNV 120
DLENTNDLSV RMNLVIHKDC PNNAQGGDEE IGKGDMVHKR RRMRESSSQP SIFISSLSCK 180
CAIITRNEEL KHKGGHFEDL DLELRLGGDP RKTN
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189307 | 1e-105 | AC189307.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence. |
| GenBank | AC189510 | 1e-105 | AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence. |
