PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 811aa MW: 91494.5 Da PI: 6.5865

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC665_p6	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40	1.3e-12	37	114	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA+++ F+ + + + + + r+fvCs + ++++++++ C+a+l+++++ +kw+vtk+++eH+H l+ RrC665_p6 37 SFYDEYARQLSFTSKLLSLPTD--SSSSSAREFVCSSSSSSKRSRRR----------PTEICDAMLRIELKGGHKWVVTKFVKEHSHGLS 114 5************9999888..555699**98776654433..........5567************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-8	38	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-22	215	306	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.695	491	527	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-9	497	525	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-8	502	529	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence Send to blast
MDDIHLVDPM VNQEMDEIGV AEPCVGMEFD SEKEAKSFYD EYARQLSFTS KLLSLPTDSS 60 SSSAREFVCS SSSSSKRSRR RPTEICDAML RIELKGGHKW VVTKFVKEHS HGLSTPNTLH 120 CLRPRRHFAS SNVPSGMMYV SMDGGSRAAS AKDPKRTLGR DAHNLLEYFN RMQAENPGFF 180 YAIQLDDDNN NNQMTNVFWA DSRSRIAYTR FGDTVTLDTR YKSSQFLVPF APFTGVNHHG 240 QAVLFGCALI LDDSEASFIW LFKTFLTAMR DHPPVSLVTD QDRAIQLAAA QVFPGARHCI 300 NKWDVLREGQ DKLAHVSLAY PSFQVELYNC INFTETVEEF ESSWSSIVDK YDLGRHEWLS 360 SIYNARAQWV PVYFRDSFFA ALFPTTQGSF FDGYVNQQTT LPIFFRLYER AMESWFEMEM 420 EADLDTANAP PILKTPSPME SQAANLYTRR IFEKFQAELV ETFAYTANRI DDDGTSTTFR 480 VAKFENDNKA YMVSFCYPEM RANCSCQMFE HSGILCRHVL TVFTVTNILT LPPHYILGRW 540 TRNAKSLVEM DERVSDDGLL HRYNHLCREA IKYAEEGAAT PESYNIALGA LREGGKKVSA 600 VRKSVGRAAP PSSHGGVDAK ASLSASDSTP LLWPRHDEMT RRFNLNDGGA RAQSVADLNL 660 PRMAPISLHR DDGAPENMVA LPCLKSMTWG MESKNTIPGG RVAVINLKLH DYRKFPSADM 720 EVKFQLSSVT LEPMLKSMAY ISEQLSAPAN RVAVINLKLQ DTETSTGESE VKFQVSRDTL 780 GAMLRSMAYI REQLSIVGEL QTEPQGKKQR K

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence Send to blast

MDDIHLVDPM VNQEMDEIGV AEPCVGMEFD SEKEAKSFYD EYARQLSFTS KLLSLPTDSS  60
SSSAREFVCS SSSSSKRSRR RPTEICDAML RIELKGGHKW VVTKFVKEHS HGLSTPNTLH  120
CLRPRRHFAS SNVPSGMMYV SMDGGSRAAS AKDPKRTLGR DAHNLLEYFN RMQAENPGFF  180
YAIQLDDDNN NNQMTNVFWA DSRSRIAYTR FGDTVTLDTR YKSSQFLVPF APFTGVNHHG  240
QAVLFGCALI LDDSEASFIW LFKTFLTAMR DHPPVSLVTD QDRAIQLAAA QVFPGARHCI  300
NKWDVLREGQ DKLAHVSLAY PSFQVELYNC INFTETVEEF ESSWSSIVDK YDLGRHEWLS  360
SIYNARAQWV PVYFRDSFFA ALFPTTQGSF FDGYVNQQTT LPIFFRLYER AMESWFEMEM  420
EADLDTANAP PILKTPSPME SQAANLYTRR IFEKFQAELV ETFAYTANRI DDDGTSTTFR  480
VAKFENDNKA YMVSFCYPEM RANCSCQMFE HSGILCRHVL TVFTVTNILT LPPHYILGRW  540
TRNAKSLVEM DERVSDDGLL HRYNHLCREA IKYAEEGAAT PESYNIALGA LREGGKKVSA  600
VRKSVGRAAP PSSHGGVDAK ASLSASDSTP LLWPRHDEMT RRFNLNDGGA RAQSVADLNL  660
PRMAPISLHR DDGAPENMVA LPCLKSMTWG MESKNTIPGG RVAVINLKLH DYRKFPSADM  720
EVKFQLSSVT LEPMLKSMAY ISEQLSAPAN RVAVINLKLQ DTETSTGESE VKFQVSRDTL  780
GAMLRSMAYI REQLSIVGEL QTEPQGKKQR K

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189333	0.0	AC189333.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038M13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018476843.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A3P6AUK8	0.0	A0A3P6AUK8_BRAOL; Uncharacterized protein
STRING	Bo3g041650.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]