PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 211aa MW: 23568.2 Da PI: 5.3411

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6615_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.6	7.7e-14	11	49	1	38
S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 k+ie k r+vtf+kRrng++ KA+EL+ L ++++a++ RrC6615_p2 11 KFIEGKAVRSVTFTKRRNGLFRKASELCLLSpATQIAIL 49 79****************************834567665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-12	3	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.713	3	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-10	5	25	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.59E-22	5	80	No hit	No description
SuperFamily	SSF55455	1.44E-16	5	97	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-11	12	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-10	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MGGLKRKIEI KFIEGKAVRS VTFTKRRNGL FRKASELCLL SPATQIAILA TPPATNSHAD 60 FYSFGHSSVD HVVSSLLHDQ SPGDPTNQVE NRRFGFWWED EALGRLENVD ELRDATDAVS 120 RMLNNLRLRL DAVRSNQRDG ANLVIHQEEV PQLCNTNTNN KNEETTTQIA NSEGASGSGS 180 SVQKEEDVLH IDGLGTDDFF TDFKFDPLFK F

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018463935.1	1e-123	PREDICTED: agamous-like MADS-box protein AGL97
Swissprot	Q9C633	3e-42	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	M4EEA4	1e-107	M4EEA4_BRARP; Uncharacterized protein
STRING	Bra027116.1-P	1e-108	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60920.1	9e-66	AGAMOUS-like 55

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]